PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g21473.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 579aa    MW: 65791.4 Da    PI: 7.1
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g21473.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1621.7e-19262382290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................................tekerrtraetrtg 61 
                        Yn+YA ++GFs+r s+sk+s  ++e+ k+ fvC+k  +++ + +k                                  +k+rr+++ + t+
  Bradi2g21473.1.p 262 HYNAYALRLGFSTRSSTSKRSVYTNEVEKQLFVCNKFREPKVDGEKtqktkvapdvssesevdsedendqedalhvgkkPRKKRRRETMKGTN 354
                       6***********************************99999888778899***************************9878888899999*** PP

              FAR1  62 CkaklkvkkekdgkwevtkleleHnHela 90 
                       Cka+l vk++ d+ w+v  +  eHnH+l 
  Bradi2g21473.1.p 355 CKARLIVKLM-DNIWQVVYFIAEHNHPLI 382
                       **********.9***************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.4E-18262382IPR004330FAR1 DNA binding domain
PfamPF105512.2E-22505577IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MYLDGTSGCM CILGVPEMHT SKRKVPDELF LNGTRCPPDS PAPDLRATVA VIPGPCSLLS  60
RASDRGFRDP SRKQKGNTEK SKKKREKCRK SKKQSIPPRF DPDLLLLPWC LLPPMKFPHG  120
CCPKNKNQSR NLRLKNIFVK MDWLNLNELP TDLVDDTNDA VGEGCATTTL PSYCTQPALH  180
GEVSQAICTE GNVVASHNGS MQFASYEGQV GQIESTNFNQ DTTSMPDNDN NDVEIPEDEV  240
LSQPSEPYLG MRFDTLLCAK DHYNAYALRL GFSTRSSTSK RSVYTNEVEK QLFVCNKFRE  300
PKVDGEKTQK TKVAPDVSSE SEVDSEDEND QEDALHVGKK PRKKRRRETM KGTNCKARLI  360
VKLMDNIWQV VYFIAEHNHP LINKPSLTKY LRSHQGIPKK EENFLRILHD SNLETGHMMQ  420
LMSSFYGSGL LVPYTTKAIS NYRSRMRAQT RGGDMTETIS YFTQKRLDDP DFYFKVLLDD  480
EQRVQNFFWV DGAARTTYED AYSDCISFDT TYLTNQYNMP FAPFIGINRH GQSFMLGCGF  540
LRDEKATSFD WLFETYLDAM NDKAPKNIIT DQDWAMHA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338346KKPRKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753615.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A0Q3I6841e-171A0A0Q3I684_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI1G10750.11e-143(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7287518
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-46FAR1-related sequence 5